Quality Control¶
The Quality Control subpipeline checks incoming reads to ensure they are high quality. It runs directly on the raw reads.
Modules¶
FastQC¶
FastQC provides simple quality control checks on raw sequence data. It provides a set of analyses that help researchers diagnose any downstream issues or outliers.
FastQC produces two files. An standalone HTML file with diagnostic graphs and a zip file with the intermeidate data used to build the HTML report. An example of the output files from this module may be found on Pangea.